PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004242.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 190aa    MW: 21619.4 Da    PI: 10.4936
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004242.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.21.3e-1819117190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              +fY +YA ++GF+vr+++++k  r g++ ++ +vCs++g++++ k+           + +++ + + +r++C+ak+ +k++ dg +
  Itr_sc004242.1_g00006.1  19 DFYVRYACTIGFDVRRRTESKD-RWGKVLRKYLVCSRQGFKQPAKEVcpvgegvghtSISSKIRWVMNRVSCNAKIILKLMGDGGY 103
                              6*****************9998.7777****************9999*******9876677778899******************* PP

                     FAR1  77 evtkleleHnHela 90 
                               v +le  H+H l+
  Itr_sc004242.1_g00006.1 104 SVFSLEVRHTHCLC 117
                              ***********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1519117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MMKVCQVGLR FSKLDDGVDF YVRYACTIGF DVRRRTESKD RWGKVLRKYL VCSRQGFKQP  60
AKEVCPVGEG VGHTSISSKI RWVMNRVSCN AKIILKLMGD GGYSVFSLEV RHTHCLCSEV  120
SKPFMRVHRK LTFGHQSFVA NCARANIGPI KSFKLYKQMV GKYVDVGATG VDFKNFKRDL  180
MAYISRGMHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5